Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC21.69■■□□□ 1.06
MSH6P52701 RN7SL725P-201ENST00000606439 259 ntBASIC21.69■■□□□ 1.06
MSH6P52701 AC100757.4-201ENST00000626934 759 ntBASIC21.69■■□□□ 1.06
MSH6P52701 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MSH6P52701 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
MSH6P52701 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH6P52701 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH6P52701 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 TK1-203ENST00000588734 1681 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
MSH6P52701 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 KLF2P2-201ENST00000416807 1039 ntBASIC21.68■■□□□ 1.06
MSH6P52701 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 AC234782.1-201ENST00000451950 919 ntBASIC21.68■■□□□ 1.06
MSH6P52701 LY6E-208ENST00000520531 490 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC21.68■■□□□ 1.06
MSH6P52701 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH6P52701 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
MSH6P52701 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH6P52701 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH6P52701 OARD1-204ENST00000464633 717 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH6P52701 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC21.67■■□□□ 1.06
MSH6P52701 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH6P52701 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH6P52701 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH6P52701 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
MSH6P52701 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH6P52701 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
MSH6P52701 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 AC011742.3-201ENST00000439053 820 ntBASIC21.66■■□□□ 1.06
MSH6P52701 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC21.66■■□□□ 1.06
MSH6P52701 AC005740.2-201ENST00000511085 419 ntBASIC21.66■■□□□ 1.06
MSH6P52701 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC21.66■■□□□ 1.06
MSH6P52701 AL161670.2-201ENST00000557650 1227 ntBASIC21.66■■□□□ 1.06
MSH6P52701 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.66■■□□□ 1.06
MSH6P52701 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSH6P52701 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH6P52701 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms