Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.33■□□□□ 0.52
CTCFP49711 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.33■□□□□ 0.52
CTCFP49711 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.33■□□□□ 0.52
CTCFP49711 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.33■□□□□ 0.52
CTCFP49711 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
CTCFP49711 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CTCFP49711 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.33■□□□□ 0.52
CTCFP49711 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CTCFP49711 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.32■□□□□ 0.52
CTCFP49711 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 AC097065.1-201ENST00000425737 517 ntBASIC18.32■□□□□ 0.52
CTCFP49711 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.32■□□□□ 0.52
CTCFP49711 HSPB1P2-201ENST00000448722 546 ntBASIC18.32■□□□□ 0.52
CTCFP49711 NOC2LP1-201ENST00000450578 752 ntBASIC18.32■□□□□ 0.52
CTCFP49711 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.32■□□□□ 0.52
CTCFP49711 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.32■□□□□ 0.52
CTCFP49711 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.32■□□□□ 0.52
CTCFP49711 AC007663.3-201ENST00000609632 465 ntBASIC18.32■□□□□ 0.52
CTCFP49711 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 AL606763.1-201ENST00000629535 462 ntTSL 3 BASIC18.32■□□□□ 0.52
CTCFP49711 AL139011.1-202ENST00000642063 584 ntBASIC18.32■□□□□ 0.52
CTCFP49711 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CTCFP49711 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC18.32■□□□□ 0.52
CTCFP49711 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
CTCFP49711 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 PARVG-202ENST00000415224 999 ntTSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 SERPINA13P-202ENST00000478994 924 ntBASIC18.31■□□□□ 0.52
CTCFP49711 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.31■□□□□ 0.52
CTCFP49711 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.31■□□□□ 0.52
CTCFP49711 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.31■□□□□ 0.52
CTCFP49711 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.31■□□□□ 0.52
CTCFP49711 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 CROCCP2-202ENST00000412962 2773 ntBASIC18.31■□□□□ 0.52
CTCFP49711 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
CTCFP49711 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.31■□□□□ 0.52
CTCFP49711 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.31■□□□□ 0.52
CTCFP49711 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CTCFP49711 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
CTCFP49711 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 AC008132.1-202ENST00000342005 1389 ntBASIC18.3■□□□□ 0.52
CTCFP49711 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.3■□□□□ 0.52
CTCFP49711 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CTCFP49711 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CTCFP49711 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms