Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HADHAP40939 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HADHAP40939 CNN2P11-201ENST00000429351 262 ntBASIC16.16■□□□□ 0.18
HADHAP40939 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 AC023141.5-201ENST00000458585 616 ntBASIC16.16■□□□□ 0.18
HADHAP40939 ALG1L8P-201ENST00000533887 760 ntBASIC16.16■□□□□ 0.18
HADHAP40939 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.16■□□□□ 0.18
HADHAP40939 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 SNHG9-202ENST00000564014 471 ntBASIC16.16■□□□□ 0.18
HADHAP40939 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HADHAP40939 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 AC026979.3-201ENST00000607315 403 ntBASIC16.16■□□□□ 0.18
HADHAP40939 AC009093.7-201ENST00000623853 1223 ntBASIC16.16■□□□□ 0.18
HADHAP40939 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
HADHAP40939 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
HADHAP40939 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
HADHAP40939 AC020658.6-201ENST00000623564 1870 ntBASIC16.16■□□□□ 0.18
HADHAP40939 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HADHAP40939 AC103702.1-201ENST00000548801 2630 ntBASIC16.15■□□□□ 0.18
HADHAP40939 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
HADHAP40939 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 AC243562.2-201ENST00000561247 970 ntBASIC16.15■□□□□ 0.18
HADHAP40939 AC093520.2-201ENST00000561830 333 ntBASIC16.15■□□□□ 0.18
HADHAP40939 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 PRAL-201ENST00000624952 3286 ntBASIC16.15■□□□□ 0.18
HADHAP40939 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.15■□□□□ 0.18
HADHAP40939 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HADHAP40939 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
HADHAP40939 AC006058.4-201ENST00000624016 1670 ntBASIC16.14■□□□□ 0.18
HADHAP40939 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
HADHAP40939 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HADHAP40939 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.14■□□□□ 0.17
HADHAP40939 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 TMBIM7P-203ENST00000641617 1718 ntBASIC16.14■□□□□ 0.17
HADHAP40939 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HADHAP40939 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.14■□□□□ 0.17
HADHAP40939 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.14■□□□□ 0.17
HADHAP40939 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.14■□□□□ 0.17
HADHAP40939 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HADHAP40939 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HADHAP40939 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms