Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.75■□□□□ 0.27
BDNFP23560 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.75■□□□□ 0.27
BDNFP23560 AC005225.4-201ENST00000557330 545 ntBASIC16.75■□□□□ 0.27
BDNFP23560 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.75■□□□□ 0.27
BDNFP23560 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
BDNFP23560 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
BDNFP23560 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
BDNFP23560 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
BDNFP23560 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.74■□□□□ 0.27
BDNFP23560 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC16.74■□□□□ 0.27
BDNFP23560 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
BDNFP23560 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 MEP1AP4-201ENST00000423244 1087 ntBASIC16.74■□□□□ 0.27
BDNFP23560 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.74■□□□□ 0.27
BDNFP23560 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.74■□□□□ 0.27
BDNFP23560 RN7SL692P-201ENST00000464677 288 ntBASIC16.74■□□□□ 0.27
BDNFP23560 AL596325.1-201ENST00000563991 1082 ntBASIC16.74■□□□□ 0.27
BDNFP23560 AL603832.2-201ENST00000566195 2125 ntBASIC16.74■□□□□ 0.27
BDNFP23560 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 AC008494.3-201ENST00000606615 944 ntBASIC16.74■□□□□ 0.27
BDNFP23560 AC012645.4-201ENST00000610691 1061 ntBASIC16.74■□□□□ 0.27
BDNFP23560 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.74■□□□□ 0.27
BDNFP23560 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.74■□□□□ 0.27
BDNFP23560 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.74■□□□□ 0.27
BDNFP23560 AC010491.1-201ENST00000563101 2797 ntBASIC16.74■□□□□ 0.27
BDNFP23560 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
BDNFP23560 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
BDNFP23560 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
BDNFP23560 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
BDNFP23560 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.74■□□□□ 0.27
BDNFP23560 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
BDNFP23560 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
BDNFP23560 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 DGCR5-201ENST00000399539 862 ntBASIC16.73■□□□□ 0.27
BDNFP23560 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.73■□□□□ 0.27
BDNFP23560 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.73■□□□□ 0.27
BDNFP23560 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
BDNFP23560 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.73■□□□□ 0.27
BDNFP23560 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.73■□□□□ 0.27
BDNFP23560 RBM7-207ENST00000544582 692 ntTSL 3 BASIC16.73■□□□□ 0.27
BDNFP23560 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC16.73■□□□□ 0.27
BDNFP23560 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.73■□□□□ 0.27
BDNFP23560 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.73■□□□□ 0.27
BDNFP23560 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.73■□□□□ 0.27
BDNFP23560 AC007431.3-201ENST00000623221 587 ntBASIC16.73■□□□□ 0.27
BDNFP23560 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.73■□□□□ 0.27
BDNFP23560 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.73■□□□□ 0.27
BDNFP23560 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
BDNFP23560 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms