Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGA1P17096 MSTO2P-201ENST00000314835 1709 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
HMGA1P17096 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.36■□□□□ 0.21
HMGA1P17096 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGA1P17096 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGA1P17096 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
HMGA1P17096 BOLA2P3-201ENST00000404566 256 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGA1P17096 KRT43P-201ENST00000434019 910 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.36■□□□□ 0.21
HMGA1P17096 AC068587.3-201ENST00000526613 355 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 AP005482.1-201ENST00000563722 1273 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 COX11-210ENST00000639671 696 ntBASIC16.36■□□□□ 0.21
HMGA1P17096 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGA1P17096 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGA1P17096 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HMGA1P17096 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.35■□□□□ 0.21
HMGA1P17096 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGA1P17096 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGA1P17096 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGA1P17096 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGA1P17096 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGA1P17096 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HMGA1P17096 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGA1P17096 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.35■□□□□ 0.21
HMGA1P17096 AC005229.1-201ENST00000392885 409 ntBASIC16.35■□□□□ 0.21
HMGA1P17096 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 AC093433.1-201ENST00000458048 571 ntBASIC16.35■□□□□ 0.21
HMGA1P17096 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.35■□□□□ 0.21
HMGA1P17096 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 PTP4A1P2-201ENST00000546033 454 ntBASIC16.35■□□□□ 0.21
HMGA1P17096 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGA1P17096 AC024909.3-201ENST00000611513 2257 ntBASIC16.35■□□□□ 0.21
HMGA1P17096 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HMGA1P17096 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.35■□□□□ 0.21
HMGA1P17096 PDIA3P1-201ENST00000471856 1510 ntBASIC16.35■□□□□ 0.21
HMGA1P17096 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGA1P17096 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HMGA1P17096 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGA1P17096 BCRP2-202ENST00000447763 634 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 BCRP6-201ENST00000510112 632 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 BCRP7-201ENST00000511549 544 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HMGA1P17096 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 AP001063.1-201ENST00000568332 529 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 AC009486.1-201ENST00000569860 813 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGA1P17096 AC107373.2-201ENST00000607735 490 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 AL022328.1-201ENST00000610050 478 ntBASIC16.34■□□□□ 0.21
HMGA1P17096 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms