Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 AC134915.1-201ENST00000426461 574 ntBASIC16.14■□□□□ 0.17
HOXC11O43248 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.14■□□□□ 0.17
HOXC11O43248 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC11O43248 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.14■□□□□ 0.17
HOXC11O43248 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.14■□□□□ 0.17
HOXC11O43248 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.14■□□□□ 0.17
HOXC11O43248 AC233724.13-201ENST00000598383 410 ntBASIC16.14■□□□□ 0.17
HOXC11O43248 AL049840.4-201ENST00000602422 811 ntBASIC16.14■□□□□ 0.17
HOXC11O43248 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC11O43248 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC11O43248 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.14■□□□□ 0.17
HOXC11O43248 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC11O43248 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC16.14■□□□□ 0.17
HOXC11O43248 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC11O43248 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.14■□□□□ 0.17
HOXC11O43248 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC11O43248 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 MTHFR-217ENST00000641820 1569 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.13■□□□□ 0.17
HOXC11O43248 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 SOCS2P1-201ENST00000417727 557 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 KRT43P-201ENST00000434019 910 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC11O43248 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC120045.2-201ENST00000567334 178 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC11O43248 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC11O43248 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 AL121723.1-201ENST00000445194 1519 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HOXC11O43248 PCDHB19P-201ENST00000570871 2371 ntBASIC16.13■□□□□ 0.17
HOXC11O43248 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC11O43248 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.12■□□□□ 0.17
HOXC11O43248 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
HOXC11O43248 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
HOXC11O43248 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 RPS2P32-201ENST00000439199 892 ntBASIC16.12■□□□□ 0.17
HOXC11O43248 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC11O43248 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC16.12■□□□□ 0.17
HOXC11O43248 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.12■□□□□ 0.17
HOXC11O43248 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC11O43248 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.12■□□□□ 0.17
HOXC11O43248 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.12■□□□□ 0.17
HOXC11O43248 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms