Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
VCANP13611 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.14■□□□□ 0.17
VCANP13611 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC16.13■□□□□ 0.17
VCANP13611 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC16.13■□□□□ 0.17
VCANP13611 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 ARRB2-218ENST00000575877 1579 ntTSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.13■□□□□ 0.17
VCANP13611 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 AL138781.2-201ENST00000617896 1843 ntBASIC16.13■□□□□ 0.17
VCANP13611 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC16.13■□□□□ 0.17
VCANP13611 TP53-221ENST00000615910 1149 ntTSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.13■□□□□ 0.17
VCANP13611 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
VCANP13611 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 AC148477.4-201ENST00000613430 1793 ntBASIC16.12■□□□□ 0.17
VCANP13611 SLC25A1P3-201ENST00000395415 828 ntBASIC16.12■□□□□ 0.17
VCANP13611 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.12■□□□□ 0.17
VCANP13611 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 AC093813.1-201ENST00000605066 256 ntBASIC16.12■□□□□ 0.17
VCANP13611 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 MARK2P5-201ENST00000507649 634 ntBASIC16.12■□□□□ 0.17
VCANP13611 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC16.12■□□□□ 0.17
VCANP13611 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
VCANP13611 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
VCANP13611 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 AL031713.1-201ENST00000564813 661 ntBASIC16.12■□□□□ 0.17
VCANP13611 LINC01451-201ENST00000623792 534 ntBASIC16.12■□□□□ 0.17
VCANP13611 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
VCANP13611 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.12■□□□□ 0.17
VCANP13611 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.11■□□□□ 0.17
VCANP13611 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.11■□□□□ 0.17
VCANP13611 AC011247.3-201ENST00000603297 438 ntBASIC16.11■□□□□ 0.17
VCANP13611 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
VCANP13611 AP005019.2-201ENST00000615104 511 ntBASIC16.11■□□□□ 0.17
VCANP13611 ETV2-208ENST00000621247 941 ntTSL 5 BASIC16.11■□□□□ 0.17
VCANP13611 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC16.11■□□□□ 0.17
VCANP13611 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.11■□□□□ 0.17
VCANP13611 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
VCANP13611 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.11■□□□□ 0.17
VCANP13611 AC133963.1-201ENST00000504166 1679 ntBASIC16.11■□□□□ 0.17
VCANP13611 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
VCANP13611 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms