Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 FAM45BP-202ENST00000592932 1624 ntBASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM49D1C9J1S8 AL161772.1-201ENST00000610494 4412 ntBASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AL031284.1-201ENST00000419297 478 ntBASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AL773604.1-201ENST00000617417 272 ntBASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AC007064.4-201ENST00000637740 555 ntBASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 AC126755.1-201ENST00000525846 6405 ntBASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM49D1C9J1S8 WASH6P-202ENST00000359512 1437 ntBASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AC106881.1-201ENST00000605849 3329 ntBASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 KRT18P56-201ENST00000507275 550 ntBASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AL691432.3-201ENST00000621860 400 ntBASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AC116407.3-201ENST00000623905 1129 ntBASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
TRIM49D1C9J1S8 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.02■□□□□ 0.15
TRIM49D1C9J1S8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms