Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.39■□□□□ 0.05
CLHC1Q8NHS4 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AC020658.6-201ENST00000623564 1870 ntBASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AC112191.1-201ENST00000523689 701 ntBASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 RARRES2P8-201ENST00000566335 367 ntBASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AC011477.6-201ENST00000604980 1927 ntBASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.38■□□□□ 0.05
CLHC1Q8NHS4 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AC023274.1-201ENST00000418278 595 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 FDX1P1-201ENST00000449115 551 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 KRT18P3-201ENST00000451602 1288 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 AP001282.1-201ENST00000531301 1499 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 FOXO1B-201ENST00000504678 1527 ntBASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
CLHC1Q8NHS4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms