Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC17.89■□□□□ 0.45
CIITAP33076 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 MEP1AP4-201ENST00000423244 1087 ntBASIC17.89■□□□□ 0.45
CIITAP33076 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 AL353779.1-201ENST00000434793 351 ntBASIC17.89■□□□□ 0.45
CIITAP33076 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 API5-211ENST00000534695 560 ntTSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 SPDYE22P-201ENST00000582158 798 ntBASIC17.89■□□□□ 0.45
CIITAP33076 AC099568.2-201ENST00000609194 695 ntBASIC17.89■□□□□ 0.45
CIITAP33076 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.89■□□□□ 0.45
CIITAP33076 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
CIITAP33076 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
CIITAP33076 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.88■□□□□ 0.45
CIITAP33076 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
CIITAP33076 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CIITAP33076 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.88■□□□□ 0.45
CIITAP33076 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 CRB3P1-201ENST00000449338 276 ntBASIC17.88■□□□□ 0.45
CIITAP33076 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 TPRX2P-201ENST00000535362 881 ntBASIC17.88■□□□□ 0.45
CIITAP33076 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC17.88■□□□□ 0.45
CIITAP33076 AC190387.1-201ENST00000551683 408 ntBASIC17.88■□□□□ 0.45
CIITAP33076 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC17.88■□□□□ 0.45
CIITAP33076 RARRES2P5-201ENST00000564013 466 ntBASIC17.88■□□□□ 0.45
CIITAP33076 AL132655.2-201ENST00000596276 594 ntBASIC17.88■□□□□ 0.45
CIITAP33076 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.88■□□□□ 0.45
CIITAP33076 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 SLC7A15P-201ENST00000424028 1363 ntBASIC17.88■□□□□ 0.45
CIITAP33076 AL391825.1-201ENST00000457671 1364 ntBASIC17.88■□□□□ 0.45
CIITAP33076 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
CIITAP33076 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 AC138969.3-201ENST00000546612 1459 ntBASIC17.88■□□□□ 0.45
CIITAP33076 AC138932.2-201ENST00000548268 1459 ntBASIC17.88■□□□□ 0.45
CIITAP33076 AC126755.4-201ENST00000549796 1459 ntBASIC17.88■□□□□ 0.45
CIITAP33076 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CIITAP33076 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC17.88■□□□□ 0.45
CIITAP33076 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.87■□□□□ 0.45
CIITAP33076 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
CIITAP33076 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.87■□□□□ 0.45
CIITAP33076 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
CIITAP33076 RRP7BP-205ENST00000566851 833 ntBASIC17.87■□□□□ 0.45
CIITAP33076 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.87■□□□□ 0.45
CIITAP33076 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.87■□□□□ 0.45
CIITAP33076 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
CIITAP33076 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
CIITAP33076 AL158212.4-201ENST00000624062 1286 ntBASIC17.87■□□□□ 0.45
CIITAP33076 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.87■□□□□ 0.45
CIITAP33076 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms