Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC31,63■■■□□ 2,65
Cln3Q61124 Gm42596-201ENSMUST00000196305 1958 ntBASIC31,6■■■□□ 2,65
Cln3Q61124 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC31,58■■■□□ 2,65
Cln3Q61124 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC31,58■■■□□ 2,65
Cln3Q61124 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC31,55■■■□□ 2,64
Cln3Q61124 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC31,55■■■□□ 2,64
Cln3Q61124 CT025624.2-201ENSMUST00000223609 1909 ntBASIC31,55■■■□□ 2,64
Cln3Q61124 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC31,52■■■□□ 2,64
Cln3Q61124 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC31,5■■■□□ 2,63
Cln3Q61124 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC31,49■■■□□ 2,63
Cln3Q61124 Gm27322-201ENSMUST00000184007 104 ntBASIC31,48■■■□□ 2,63
Cln3Q61124 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31,47■■■□□ 2,63
Cln3Q61124 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC31,44■■■□□ 2,62
Cln3Q61124 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC31,37■■■□□ 2,61
Cln3Q61124 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC31,36■■■□□ 2,61
Cln3Q61124 Gm24804-201ENSMUST00000174982 85 ntBASIC31,36■■■□□ 2,61
Cln3Q61124 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC31,24■■■□□ 2,59
Cln3Q61124 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC31,21■■■□□ 2,59
Cln3Q61124 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC31,15■■■□□ 2,58
Cln3Q61124 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC31,13■■■□□ 2,57
Cln3Q61124 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC31,08■■■□□ 2,57
Cln3Q61124 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC31,08■■■□□ 2,57
Cln3Q61124 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31,08■■■□□ 2,57
Cln3Q61124 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC31,03■■■□□ 2,56
Cln3Q61124 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31,01■■■□□ 2,56
Cln3Q61124 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC31,01■■■□□ 2,55
Cln3Q61124 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC30,95■■■□□ 2,55
Cln3Q61124 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC30,91■■■□□ 2,54
Cln3Q61124 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC30,88■■■□□ 2,53
Cln3Q61124 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC30,87■■■□□ 2,53
Cln3Q61124 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC30,86■■■□□ 2,53
Cln3Q61124 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC30,85■■■□□ 2,53
Cln3Q61124 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC30,82■■■□□ 2,52
Cln3Q61124 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC30,79■■■□□ 2,52
Cln3Q61124 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC30,79■■■□□ 2,52
Cln3Q61124 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC30,79■■■□□ 2,52
Cln3Q61124 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC30,78■■■□□ 2,52
Cln3Q61124 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC30,77■■■□□ 2,52
Cln3Q61124 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC30,76■■■□□ 2,51
Cln3Q61124 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC30,75■■■□□ 2,51
Cln3Q61124 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC30,75■■■□□ 2,51
Cln3Q61124 AL845457.1-201ENSMUST00000197244 68 ntBASIC30,74■■■□□ 2,51
Cln3Q61124 AC166822.3-201ENSMUST00000227394 661 ntBASIC30,74■■■□□ 2,51
Cln3Q61124 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC30,72■■■□□ 2,51
Cln3Q61124 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC30,71■■■□□ 2,51
Cln3Q61124 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC30,7■■■□□ 2,51
Cln3Q61124 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC30,69■■■□□ 2,5
Cln3Q61124 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC30,67■■■□□ 2,5
Cln3Q61124 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC30,67■■■□□ 2,5
Cln3Q61124 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC30,67■■■□□ 2,5
Cln3Q61124 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC30,63■■■□□ 2,49
Cln3Q61124 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC30,61■■■□□ 2,49
Cln3Q61124 Zfp131-205ENSMUST00000223812 663 ntBASIC30,59■■■□□ 2,49
Cln3Q61124 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC30,55■■■□□ 2,48
Cln3Q61124 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC30,52■■■□□ 2,48
Cln3Q61124 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC30,49■■■□□ 2,47
Cln3Q61124 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC30,48■■■□□ 2,47
Cln3Q61124 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC30,47■■■□□ 2,47
Cln3Q61124 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC30,45■■■□□ 2,47
Cln3Q61124 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC30,44■■■□□ 2,46
Cln3Q61124 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC30,4■■■□□ 2,46
Cln3Q61124 Zfp131-207ENSMUST00000224946 1783 ntBASIC30,37■■■□□ 2,45
Cln3Q61124 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC30,35■■■□□ 2,45
Cln3Q61124 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC30,32■■■□□ 2,44
Cln3Q61124 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC30,3■■■□□ 2,44
Cln3Q61124 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC30,29■■■□□ 2,44
Cln3Q61124 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC30,29■■■□□ 2,44
Cln3Q61124 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC30,28■■■□□ 2,44
Cln3Q61124 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC30,27■■■□□ 2,44
Cln3Q61124 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC30,25■■■□□ 2,43
Cln3Q61124 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC30,23■■■□□ 2,43
Cln3Q61124 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC30,23■■■□□ 2,43
Cln3Q61124 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC30,2■■■□□ 2,43
Cln3Q61124 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC30,15■■■□□ 2,42
Cln3Q61124 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC30,15■■■□□ 2,42
Cln3Q61124 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC30,13■■■□□ 2,41
Cln3Q61124 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC30,11■■■□□ 2,41
Cln3Q61124 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC30,1■■■□□ 2,41
Cln3Q61124 Gm16148-201ENSMUST00000119653 893 ntBASIC30,1■■■□□ 2,41
Cln3Q61124 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC30,07■■■□□ 2,4
Cln3Q61124 Peli2-204ENSMUST00000226513 1320 ntBASIC30,06■■■□□ 2,4
Cln3Q61124 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC30,05■■■□□ 2,4
Cln3Q61124 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC30,05■■■□□ 2,4
Cln3Q61124 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC30,02■■■□□ 2,4
Cln3Q61124 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC30,02■■■□□ 2,4
Cln3Q61124 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC30,01■■■□□ 2,4
Cln3Q61124 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2,39
Cln3Q61124 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC29,99■■■□□ 2,39
Cln3Q61124 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC29,98■■■□□ 2,39
Cln3Q61124 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC29,96■■■□□ 2,39
Cln3Q61124 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC29,95■■■□□ 2,39
Cln3Q61124 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29,95■■■□□ 2,38
Cln3Q61124 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC29,95■■■□□ 2,38
Cln3Q61124 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC29,94■■■□□ 2,38
Cln3Q61124 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC29,92■■■□□ 2,38
Cln3Q61124 Mipep-204ENSMUST00000225043 1548 ntBASIC29,91■■■□□ 2,38
Cln3Q61124 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29,89■■■□□ 2,38
Cln3Q61124 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC29,88■■■□□ 2,37
Cln3Q61124 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC29,87■■■□□ 2,37
Cln3Q61124 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC29,85■■■□□ 2,37
Retrieved 100 of 76,532 protein–RNA pairs in 11,3 ms