Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
Chd6A3KFM7 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.09■■□□□ 1.45
Chd6A3KFM7 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Chd6A3KFM7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.07■■□□□ 1.44
Chd6A3KFM7 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC24.01■■□□□ 1.43
Chd6A3KFM7 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC23.99■■□□□ 1.43
Chd6A3KFM7 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Chd6A3KFM7 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
Chd6A3KFM7 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC23.9■■□□□ 1.42
Chd6A3KFM7 Tdp2-203ENSMUST00000223804 1136 ntBASIC23.85■■□□□ 1.41
Chd6A3KFM7 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Chd6A3KFM7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chd6A3KFM7 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chd6A3KFM7 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Chd6A3KFM7 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chd6A3KFM7 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC23.73■■□□□ 1.39
Chd6A3KFM7 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
Chd6A3KFM7 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
Chd6A3KFM7 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
Chd6A3KFM7 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
Chd6A3KFM7 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
Chd6A3KFM7 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC23.65■■□□□ 1.38
Chd6A3KFM7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC23.59■■□□□ 1.37
Chd6A3KFM7 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Chd6A3KFM7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Chd6A3KFM7 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
Chd6A3KFM7 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd6A3KFM7 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Chd6A3KFM7 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Chd6A3KFM7 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.51■■□□□ 1.35
Chd6A3KFM7 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Chd6A3KFM7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Chd6A3KFM7 Gm16148-201ENSMUST00000119653 893 ntBASIC23.47■■□□□ 1.35
Chd6A3KFM7 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC23.46■■□□□ 1.35
Chd6A3KFM7 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC23.45■■□□□ 1.34
Chd6A3KFM7 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
Chd6A3KFM7 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC23.42■■□□□ 1.34
Chd6A3KFM7 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
Chd6A3KFM7 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC23.41■■□□□ 1.34
Chd6A3KFM7 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
Chd6A3KFM7 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
Chd6A3KFM7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
Chd6A3KFM7 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC23.38■■□□□ 1.33
Chd6A3KFM7 Gm45855-201ENSMUST00000212546 880 ntBASIC23.38■■□□□ 1.33
Chd6A3KFM7 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Chd6A3KFM7 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC23.37■■□□□ 1.33
Chd6A3KFM7 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
Chd6A3KFM7 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Chd6A3KFM7 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Chd6A3KFM7 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Chd6A3KFM7 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
Chd6A3KFM7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC23.3■■□□□ 1.32
Chd6A3KFM7 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
Chd6A3KFM7 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
Chd6A3KFM7 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
Chd6A3KFM7 AC166822.3-201ENSMUST00000227394 661 ntBASIC23.26■■□□□ 1.31
Chd6A3KFM7 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
Chd6A3KFM7 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
Chd6A3KFM7 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC23.22■■□□□ 1.31
Chd6A3KFM7 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC23.18■■□□□ 1.3
Chd6A3KFM7 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC23.17■■□□□ 1.3
Chd6A3KFM7 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
Chd6A3KFM7 Zfyve21-201ENSMUST00000021714 1308 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
Chd6A3KFM7 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
Chd6A3KFM7 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Chd6A3KFM7 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Chd6A3KFM7 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC23.12■■□□□ 1.29
Chd6A3KFM7 Psd-208ENSMUST00000224556 2034 ntBASIC23.11■■□□□ 1.29
Chd6A3KFM7 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Chd6A3KFM7 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Chd6A3KFM7 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Chd6A3KFM7 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
Chd6A3KFM7 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC23.08■■□□□ 1.28
Chd6A3KFM7 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Chd6A3KFM7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Chd6A3KFM7 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Chd6A3KFM7 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC23.04■■□□□ 1.28
Chd6A3KFM7 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Chd6A3KFM7 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Chd6A3KFM7 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Chd6A3KFM7 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC22.98■■□□□ 1.27
Chd6A3KFM7 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Chd6A3KFM7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
Chd6A3KFM7 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Chd6A3KFM7 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
Chd6A3KFM7 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Chd6A3KFM7 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Chd6A3KFM7 Gm9397-201ENSMUST00000200125 605 ntBASIC22.89■■□□□ 1.26
Chd6A3KFM7 Naa20-201ENSMUST00000002805 1172 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Chd6A3KFM7 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
Chd6A3KFM7 Gm8503-201ENSMUST00000118131 455 ntBASIC22.85■■□□□ 1.25
Chd6A3KFM7 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Chd6A3KFM7 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Chd6A3KFM7 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Chd6A3KFM7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Chd6A3KFM7 Gm15039-201ENSMUST00000118914 875 ntBASIC22.83■■□□□ 1.25
Chd6A3KFM7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
Chd6A3KFM7 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC22.81■■□□□ 1.24
Chd6A3KFM7 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
Chd6A3KFM7 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC22.76■■□□□ 1.23
Retrieved 100 of 76,532 protein–RNA pairs in 34.7 ms