Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 AL031284.1-201ENST00000419297 478 ntBASIC17.3■□□□□ 0.36
CCDC42Q96M95 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 GPX1P2-201ENST00000429271 606 ntBASIC17.3■□□□□ 0.36
CCDC42Q96M95 AC140658.5-201ENST00000438532 169 ntBASIC17.3■□□□□ 0.36
CCDC42Q96M95 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CCDC42Q96M95 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CCDC42Q96M95 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 AC079781.3-201ENST00000449110 356 ntBASIC17.29■□□□□ 0.36
CCDC42Q96M95 PRYP6-201ENST00000514804 343 ntBASIC17.29■□□□□ 0.36
CCDC42Q96M95 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 MIR7706-201ENST00000613747 67 ntBASIC17.29■□□□□ 0.36
CCDC42Q96M95 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 AC116407.3-201ENST00000623905 1129 ntBASIC17.29■□□□□ 0.36
CCDC42Q96M95 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CCDC42Q96M95 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CCDC42Q96M95 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CCDC42Q96M95 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.28■□□□□ 0.36
CCDC42Q96M95 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms