Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A5P29400 AC007663.3-201ENST00000609632 465 ntBASIC18.76■□□□□ 0.59
COL4A5P29400 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
COL4A5P29400 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.76■□□□□ 0.59
COL4A5P29400 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 FLII-221ENST00000578558 2377 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 POM121L8P-201ENST00000417732 1281 ntBASIC18.76■□□□□ 0.59
COL4A5P29400 POM121L9P-203ENST00000441984 1285 ntBASIC18.76■□□□□ 0.59
COL4A5P29400 HIST2H2BB-201ENST00000449108 381 ntBASIC18.76■□□□□ 0.59
COL4A5P29400 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.76■□□□□ 0.59
COL4A5P29400 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.76■□□□□ 0.59
COL4A5P29400 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL4A5P29400 ENPP7P14-201ENST00000621765 1040 ntBASIC18.76■□□□□ 0.59
COL4A5P29400 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.76■□□□□ 0.59
COL4A5P29400 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.75■□□□□ 0.59
COL4A5P29400 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A5P29400 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
COL4A5P29400 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 RGS5-214ENST00000429865 754 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A5P29400 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A5P29400 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC18.75■□□□□ 0.59
COL4A5P29400 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 AP000346.4-201ENST00000614827 381 ntBASIC18.75■□□□□ 0.59
COL4A5P29400 PRSS30P-206ENST00000641773 873 ntBASIC18.75■□□□□ 0.59
COL4A5P29400 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
COL4A5P29400 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.75■□□□□ 0.59
COL4A5P29400 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL4A5P29400 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL4A5P29400 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL4A5P29400 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A5P29400 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC18.74■□□□□ 0.59
COL4A5P29400 RN7SL11P-201ENST00000471305 293 ntBASIC18.74■□□□□ 0.59
COL4A5P29400 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.74■□□□□ 0.59
COL4A5P29400 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.74■□□□□ 0.59
COL4A5P29400 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.74■□□□□ 0.59
COL4A5P29400 MIR3907-201ENST00000579424 151 ntBASIC18.74■□□□□ 0.59
COL4A5P29400 RN7SL713P-201ENST00000582127 302 ntBASIC18.74■□□□□ 0.59
COL4A5P29400 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL4A5P29400 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.74■□□□□ 0.59
COL4A5P29400 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms