Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
COL5A3P25940 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.66■□□□□ 0.74
COL5A3P25940 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL5A3P25940 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC19.66■□□□□ 0.74
COL5A3P25940 RPS2P36-201ENST00000456516 831 ntBASIC19.66■□□□□ 0.74
COL5A3P25940 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 TMEM198B-204ENST00000484016 896 ntBASIC19.66■□□□□ 0.74
COL5A3P25940 AC126915.1-201ENST00000522847 1038 ntBASIC19.66■□□□□ 0.74
COL5A3P25940 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC19.66■□□□□ 0.74
COL5A3P25940 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
COL5A3P25940 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
COL5A3P25940 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL5A3P25940 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A3P25940 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 SPTLC1P5-201ENST00000450718 252 ntBASIC19.65■□□□□ 0.74
COL5A3P25940 HCG18-245ENST00000602550 559 ntTSL 4 BASIC19.65■□□□□ 0.74
COL5A3P25940 AL645939.5-201ENST00000606834 243 ntBASIC19.65■□□□□ 0.74
COL5A3P25940 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A3P25940 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL5A3P25940 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A3P25940 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A3P25940 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.65■□□□□ 0.74
COL5A3P25940 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC19.65■□□□□ 0.74
COL5A3P25940 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A3P25940 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A3P25940 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC19.64■□□□□ 0.74
COL5A3P25940 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A3P25940 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A3P25940 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
COL5A3P25940 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A3P25940 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A3P25940 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A3P25940 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
COL5A3P25940 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A3P25940 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A3P25940 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.64■□□□□ 0.73
COL5A3P25940 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.64■□□□□ 0.73
COL5A3P25940 FNTAP2-201ENST00000430308 634 ntBASIC19.64■□□□□ 0.73
COL5A3P25940 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.64■□□□□ 0.73
COL5A3P25940 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC19.64■□□□□ 0.73
COL5A3P25940 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.64■□□□□ 0.73
COL5A3P25940 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 AC244452.3-201ENST00000636814 210 ntBASIC19.64■□□□□ 0.73
COL5A3P25940 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A3P25940 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.64■□□□□ 0.73
COL5A3P25940 AGGF1P2-201ENST00000426656 2106 ntBASIC19.64■□□□□ 0.73
COL5A3P25940 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A3P25940 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
COL5A3P25940 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.63■□□□□ 0.73
COL5A3P25940 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL5A3P25940 MIR33B-201ENST00000385104 96 ntBASIC19.63■□□□□ 0.73
COL5A3P25940 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC19.63■□□□□ 0.73
COL5A3P25940 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC19.63■□□□□ 0.73
COL5A3P25940 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A3P25940 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A3P25940 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC19.63■□□□□ 0.73
COL5A3P25940 MIR4783-201ENST00000580343 82 ntBASIC19.63■□□□□ 0.73
COL5A3P25940 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.63■□□□□ 0.73
COL5A3P25940 AP001002.3-201ENST00000623482 206 ntBASIC19.63■□□□□ 0.73
COL5A3P25940 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A3P25940 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A3P25940 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
COL5A3P25940 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms