Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TNFP01375 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.56■□□□□ 0.08
TNFP01375 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TNFP01375 PCDHA14-201ENST00000506751 2298 ntBASIC15.56■□□□□ 0.08
TNFP01375 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TNFP01375 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TNFP01375 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TNFP01375 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.55■□□□□ 0.08
TNFP01375 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.55■□□□□ 0.08
TNFP01375 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.55■□□□□ 0.08
TNFP01375 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.55■□□□□ 0.08
TNFP01375 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.55■□□□□ 0.08
TNFP01375 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
TNFP01375 IGHV3-72-202ENST00000621503 303 ntBASIC15.55■□□□□ 0.08
TNFP01375 AL158212.4-201ENST00000624062 1286 ntBASIC15.55■□□□□ 0.08
TNFP01375 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 AC079328.2-201ENST00000561241 3354 ntBASIC15.55■□□□□ 0.08
TNFP01375 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.55■□□□□ 0.08
TNFP01375 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
TNFP01375 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
TNFP01375 FLJ16779-201ENST00000612722 7638 ntBASIC15.54■□□□□ 0.08
TNFP01375 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 PCDHA12-202ENST00000613593 2588 ntBASIC15.54■□□□□ 0.08
TNFP01375 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.54■□□□□ 0.08
TNFP01375 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
TNFP01375 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 TOMM22P5-201ENST00000416399 439 ntBASIC15.54■□□□□ 0.08
TNFP01375 AC136604.1-201ENST00000418535 575 ntBASIC15.54■□□□□ 0.08
TNFP01375 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.54■□□□□ 0.08
TNFP01375 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.54■□□□□ 0.08
TNFP01375 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 SLED1-202ENST00000512051 380 ntBASIC15.54■□□□□ 0.08
TNFP01375 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.54■□□□□ 0.08
TNFP01375 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.54■□□□□ 0.08
TNFP01375 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.54■□□□□ 0.08
TNFP01375 AC092552.1-201ENST00000547243 906 ntBASIC15.54■□□□□ 0.08
TNFP01375 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC15.54■□□□□ 0.08
TNFP01375 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 WFDC1-204ENST00000613603 549 ntBASIC15.54■□□□□ 0.08
TNFP01375 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 AL033527.5-201ENST00000641382 801 ntBASIC15.54■□□□□ 0.08
TNFP01375 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC15.54■□□□□ 0.08
TNFP01375 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
TNFP01375 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms