Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
AP4E1Q9UPM8 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 EEF1DP4-201ENST00000446006 880 ntBASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 RN7SL828P-201ENST00000607615 303 ntBASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
AP4E1Q9UPM8 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 MTND6P24-201ENST00000440466 518 ntBASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 AL035456.1-201ENST00000456064 1369 ntBASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
AP4E1Q9UPM8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
AP4E1Q9UPM8 AC069262.1-201ENST00000539058 672 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms