Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL118508.1-201ENST00000613502 2345 ntBASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CHMP4AQ9BY43 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AL035633.1-201ENST00000406139 838 ntBASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AL132655.2-201ENST00000596276 594 ntBASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AC097359.3-201ENST00000603982 1210 ntBASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 AL662799.1-202ENST00000614205 422 ntBASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CHMP4AQ9BY43 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
CHMP4AQ9BY43 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CHMP4AQ9BY43 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
CHMP4AQ9BY43 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC20.33■□□□□ 0.84
CHMP4AQ9BY43 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC20.33■□□□□ 0.84
CHMP4AQ9BY43 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 TP53TG3HP-202ENST00000569755 579 ntBASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 AC140912.1-201ENST00000577171 1054 ntBASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
CHMP4AQ9BY43 AC124067.4-201ENST00000519691 2379 ntBASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 CDC14C-201ENST00000428251 1719 ntBASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 AC068418.2-201ENST00000577309 3703 ntBASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 TMPRSS11CP-201ENST00000453277 683 ntBASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CHMP4AQ9BY43 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms