Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 DIO1-215ENST00000610607 796 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC21.39■■□□□ 1.01
NPHP3Q7Z494 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NPHP3Q7Z494 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 AC104457.1-201ENST00000401024 814 ntBASIC21.38■■□□□ 1.01
NPHP3Q7Z494 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 RN7SL48P-201ENST00000579283 293 ntBASIC21.38■■□□□ 1.01
NPHP3Q7Z494 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 AC138649.2-201ENST00000615886 705 ntBASIC21.38■■□□□ 1.01
NPHP3Q7Z494 CU633904.3-201ENST00000624042 1029 ntBASIC21.38■■□□□ 1.01
NPHP3Q7Z494 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
NPHP3Q7Z494 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AL138799.1-201ENST00000448213 1675 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AL023775.1-201ENST00000454907 1746 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 CYP46A4P-201ENST00000414953 267 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AC079178.1-201ENST00000420915 656 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AP001505.2-201ENST00000616815 443 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 BX539320.1-201ENST00000623759 877 ntBASIC21.37■■□□□ 1.01
NPHP3Q7Z494 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
NPHP3Q7Z494 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 MIR769-201ENST00000390225 118 ntBASIC21.36■■□□□ 1.01
NPHP3Q7Z494 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 MAGEA5-201ENST00000446757 942 ntBASIC21.36■■□□□ 1.01
NPHP3Q7Z494 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
NPHP3Q7Z494 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 90.9 ms