Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
CCDC88AQ3V6T2 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AC004987.2-201ENST00000395959 1148 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 DEF8-202ENST00000418391 852 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 PTPA-217ENST00000434095 870 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SLED1-202ENST00000512051 380 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AL451050.2-201ENST00000606967 682 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AL121723.1-201ENST00000445194 1519 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ACR-203ENST00000529621 708 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 AC091812.3-201ENST00000621362 345 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 DRD5P1-201ENST00000456605 1438 ntBASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
CCDC88AQ3V6T2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 EEF1DP6-201ENST00000449232 372 ntBASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AP001505.2-201ENST00000616815 443 ntBASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC88AQ3V6T2 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AC091046.1-201ENST00000331871 207 ntBASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 HLA-DQB2-229ENST00000411527 1059 ntBASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 AC093813.1-201ENST00000605066 256 ntBASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC88AQ3V6T2 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms