Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 RN7SL11P-201ENST00000471305 293 ntBASIC18.43■□□□□ 0.54
CTCFP49711 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC18.43■□□□□ 0.54
CTCFP49711 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.43■□□□□ 0.54
CTCFP49711 AC078819.1-201ENST00000547454 765 ntBASIC18.43■□□□□ 0.54
CTCFP49711 AC012085.1-201ENST00000548270 765 ntBASIC18.43■□□□□ 0.54
CTCFP49711 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.43■□□□□ 0.54
CTCFP49711 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CTCFP49711 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CTCFP49711 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 AL589702.1-201ENST00000641229 1509 ntBASIC18.43■□□□□ 0.54
CTCFP49711 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTCFP49711 LYSMD4-203ENST00000378904 2122 ntBASIC18.43■□□□□ 0.54
CTCFP49711 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.43■□□□□ 0.54
CTCFP49711 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CTCFP49711 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTCFP49711 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.42■□□□□ 0.54
CTCFP49711 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.42■□□□□ 0.54
CTCFP49711 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.42■□□□□ 0.54
CTCFP49711 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC18.42■□□□□ 0.54
CTCFP49711 FAM197Y7-201ENST00000432892 766 ntBASIC18.42■□□□□ 0.54
CTCFP49711 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC18.42■□□□□ 0.54
CTCFP49711 AL596276.2-201ENST00000447525 331 ntBASIC18.42■□□□□ 0.54
CTCFP49711 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.42■□□□□ 0.54
CTCFP49711 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.42■□□□□ 0.54
CTCFP49711 AC145423.3-201ENST00000615987 467 ntBASIC18.42■□□□□ 0.54
CTCFP49711 AC009084.3-201ENST00000623356 437 ntBASIC18.42■□□□□ 0.54
CTCFP49711 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.42■□□□□ 0.54
CTCFP49711 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CTCFP49711 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
CTCFP49711 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 RERG-209ENST00000546331 1383 ntTSL 2 BASIC18.42■□□□□ 0.54
CTCFP49711 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CTCFP49711 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
CTCFP49711 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC18.41■□□□□ 0.54
CTCFP49711 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC18.41■□□□□ 0.54
CTCFP49711 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC18.41■□□□□ 0.54
CTCFP49711 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CTCFP49711 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.41■□□□□ 0.54
CTCFP49711 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.41■□□□□ 0.54
CTCFP49711 AC135983.4-201ENST00000564116 1262 ntBASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms