Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.77■□□□□ 0.6
HLA-DOAP06340 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DOAP06340 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
HLA-DOAP06340 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
HLA-DOAP06340 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DOAP06340 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DOAP06340 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
HLA-DOAP06340 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
HLA-DOAP06340 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.77■□□□□ 0.59
HLA-DOAP06340 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HLA-DOAP06340 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.77■□□□□ 0.59
HLA-DOAP06340 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.59
HLA-DOAP06340 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
HLA-DOAP06340 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.77■□□□□ 0.59
HLA-DOAP06340 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 KRT18P64-201ENST00000434946 1219 ntBASIC18.76■□□□□ 0.59
HLA-DOAP06340 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HLA-DOAP06340 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC18.76■□□□□ 0.59
HLA-DOAP06340 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 KRT17P8-201ENST00000540749 863 ntBASIC18.75■□□□□ 0.59
HLA-DOAP06340 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AC133539.2-201ENST00000604757 467 ntBASIC18.75■□□□□ 0.59
HLA-DOAP06340 AC017083.2-201ENST00000608069 979 ntBASIC18.75■□□□□ 0.59
HLA-DOAP06340 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HLA-DOAP06340 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.75■□□□□ 0.59
HLA-DOAP06340 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC18.74■□□□□ 0.59
HLA-DOAP06340 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HLA-DOAP06340 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms