Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.92■□□□□ 0.46
MSH4O15457 RPL13P2-201ENST00000440687 659 ntBASIC17.92■□□□□ 0.46
MSH4O15457 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.92■□□□□ 0.46
MSH4O15457 AC092337.1-201ENST00000568699 1129 ntBASIC17.92■□□□□ 0.46
MSH4O15457 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
MSH4O15457 AF228730.6-201ENST00000641497 218 ntBASIC17.92■□□□□ 0.46
MSH4O15457 AC084121.3-201ENST00000641716 218 ntBASIC17.92■□□□□ 0.46
MSH4O15457 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
MSH4O15457 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
MSH4O15457 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.92■□□□□ 0.46
MSH4O15457 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
MSH4O15457 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
MSH4O15457 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
MSH4O15457 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
MSH4O15457 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
MSH4O15457 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH4O15457 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 LHX6-205ENST00000464484 666 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 TERF1P3-201ENST00000505638 1227 ntBASIC17.91■□□□□ 0.46
MSH4O15457 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC17.91■□□□□ 0.46
MSH4O15457 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.91■□□□□ 0.46
MSH4O15457 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.91■□□□□ 0.46
MSH4O15457 LINC02084-201ENST00000606069 1096 ntBASIC17.91■□□□□ 0.46
MSH4O15457 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
MSH4O15457 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
MSH4O15457 AL365203.3-201ENST00000609742 2057 ntBASIC17.91■□□□□ 0.46
MSH4O15457 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
MSH4O15457 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 RAC2-202ENST00000401529 569 ntTSL 4 BASIC17.9■□□□□ 0.46
MSH4O15457 KRT18P64-201ENST00000434946 1219 ntBASIC17.9■□□□□ 0.46
MSH4O15457 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC17.9■□□□□ 0.46
MSH4O15457 DOC2GP-202ENST00000514950 1163 ntBASIC17.9■□□□□ 0.46
MSH4O15457 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.9■□□□□ 0.46
MSH4O15457 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.9■□□□□ 0.46
MSH4O15457 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.9■□□□□ 0.46
MSH4O15457 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
MSH4O15457 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms