Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 KRT8P22-201ENST00000562317 1415 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 ALOX12P2-203ENST00000570921 1945 ntBASIC16.25■□□□□ 0.19
CHFRQ96EP1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHFRQ96EP1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CHFRQ96EP1 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 FAM86MP-201ENST00000340703 885 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TOMM22P5-201ENST00000416399 439 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AC133539.2-201ENST00000604757 467 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 CU634019.7-201ENST00000624153 1185 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 FP236241.2-201ENST00000624906 1185 ntBASIC16.24■□□□□ 0.19
CHFRQ96EP1 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.24■□□□□ 0.19
CHFRQ96EP1 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CHFRQ96EP1 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 ACTG1P3-201ENST00000431775 1114 ntBASIC16.23■□□□□ 0.19
CHFRQ96EP1 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CHFRQ96EP1 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.23■□□□□ 0.19
CHFRQ96EP1 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms