Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.47■□□□□ 0.07
COL28A1Q2UY09 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 AL353732.1-201ENST00000569618 1459 ntBASIC15.46■□□□□ 0.07
COL28A1Q2UY09 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PCDHB17P-201ENST00000539533 2393 ntBASIC15.46■□□□□ 0.07
COL28A1Q2UY09 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 TPRX2P-201ENST00000535362 881 ntBASIC15.46■□□□□ 0.07
COL28A1Q2UY09 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 AC243960.2-201ENST00000600996 747 ntBASIC15.46■□□□□ 0.07
COL28A1Q2UY09 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 TOP3BP1-201ENST00000420768 1380 ntBASIC15.46■□□□□ 0.07
COL28A1Q2UY09 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.46■□□□□ 0.07
COL28A1Q2UY09 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL28A1Q2UY09 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CTBP2P5-201ENST00000454986 1264 ntBASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AC044860.1-202ENST00000559481 777 ntBASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AC015936.2-201ENST00000593177 259 ntBASIC15.45■□□□□ 0.06
COL28A1Q2UY09 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL28A1Q2UY09 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL28A1Q2UY09 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
COL28A1Q2UY09 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
COL28A1Q2UY09 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms