Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIMK1P53667 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.82■□□□□ 0.12
LIMK1P53667 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIMK1P53667 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
LIMK1P53667 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.82■□□□□ 0.12
LIMK1P53667 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LIMK1P53667 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.82■□□□□ 0.12
LIMK1P53667 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.82■□□□□ 0.12
LIMK1P53667 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
LIMK1P53667 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.82■□□□□ 0.12
LIMK1P53667 ANKRD26P3-201ENST00000454044 2748 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.81■□□□□ 0.12
LIMK1P53667 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC006033.1-201ENST00000440505 426 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 ZNF767P-206ENST00000513792 565 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 TDH-203ENST00000531764 1110 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.81■□□□□ 0.12
LIMK1P53667 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.81■□□□□ 0.12
LIMK1P53667 AC133539.2-201ENST00000604757 467 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.81■□□□□ 0.12
LIMK1P53667 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.81■□□□□ 0.12
LIMK1P53667 CU634019.7-201ENST00000624153 1185 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 FP236241.2-201ENST00000624906 1185 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
LIMK1P53667 CYP2T1P-202ENST00000641596 2535 ntBASIC15.81■□□□□ 0.12
LIMK1P53667 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LIMK1P53667 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC15.8■□□□□ 0.12
LIMK1P53667 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LIMK1P53667 AC016396.2-201ENST00000562575 1417 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 SLC25A24P2-201ENST00000415059 510 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 RN7SL399P-201ENST00000471648 279 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.8■□□□□ 0.12
LIMK1P53667 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC15.8■□□□□ 0.12
LIMK1P53667 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC15.8■□□□□ 0.12
LIMK1P53667 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.8■□□□□ 0.12
LIMK1P53667 AC025048.3-201ENST00000590609 569 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 AC010328.2-201ENST00000597698 1111 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.8■□□□□ 0.12
LIMK1P53667 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.8■□□□□ 0.12
LIMK1P53667 AC005702.4-201ENST00000618393 416 ntBASIC15.8■□□□□ 0.12
LIMK1P53667 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
LIMK1P53667 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.8■□□□□ 0.12
LIMK1P53667 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIMK1P53667 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms