Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CXCL12P48061 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CXCL12P48061 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CXCL12P48061 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 NOC2LP2-201ENST00000407594 1944 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AC136604.1-201ENST00000418535 575 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 AHCYP2-201ENST00000430630 1300 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.81■□□□□ 0.12
CXCL12P48061 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AL121723.1-201ENST00000445194 1519 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 AP001582.1-201ENST00000525856 295 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 NEU3-202ENST00000526068 431 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.81■□□□□ 0.12
CXCL12P48061 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.81■□□□□ 0.12
CXCL12P48061 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.81■□□□□ 0.12
CXCL12P48061 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.81■□□□□ 0.12
CXCL12P48061 AC138951.2-201ENST00000623455 1161 ntBASIC15.81■□□□□ 0.12
CXCL12P48061 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 GRN-222ENST00000639447 1314 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.81■□□□□ 0.12
CXCL12P48061 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CXCL12P48061 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.81■□□□□ 0.12
CXCL12P48061 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 DRD5P1-201ENST00000456605 1438 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
CXCL12P48061 FAM197Y7-201ENST00000432892 766 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 AC007969.1-201ENST00000433675 447 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.8■□□□□ 0.12
CXCL12P48061 AL591846.1-201ENST00000451736 433 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 KRT18P25-201ENST00000508931 1278 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 AC078819.1-201ENST00000547454 765 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 AC012085.1-201ENST00000548270 765 ntBASIC15.8■□□□□ 0.12
CXCL12P48061 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.8■□□□□ 0.12
CXCL12P48061 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.8■□□□□ 0.12
CXCL12P48061 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.8■□□□□ 0.12
CXCL12P48061 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CXCL12P48061 PCDHB18P-201ENST00000524813 2368 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 AP001282.1-201ENST00000531301 1499 ntBASIC15.79■□□□□ 0.12
CXCL12P48061 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms