Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHA3Q9Y5H8 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PCDHA3Q9Y5H8 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC092127.1-201ENST00000567093 3455 ntBASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC105233.2-201ENST00000523697 349 ntBASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AF228730.5-201ENST00000530288 346 ntBASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC243562.2-201ENST00000561247 970 ntBASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 RARRES2P8-201ENST00000566335 367 ntBASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
PCDHA3Q9Y5H8 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC099063.4-201ENST00000641099 1602 ntBASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 HNRNPA1P28-201ENST00000424481 961 ntBASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 AC092865.6-201ENST00000642101 219 ntBASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 BNIP3P1-202ENST00000550043 1585 ntBASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PCDHA3Q9Y5H8 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 AC138035.3-201ENST00000622706 2791 ntBASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 IL9RP2-201ENST00000423948 1312 ntBASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 AKAP8P1-201ENST00000434743 1349 ntBASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDHA3Q9Y5H8 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms