Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 C18orf15-201ENST00000623680 2534 ntBASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LIMA1Q9UHB6 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 AC024267.1-201ENST00000582320 895 ntBASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LIMA1Q9UHB6 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 AC009078.2-202ENST00000463353 338 ntBASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 AC105233.2-201ENST00000523697 349 ntBASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 AF228730.5-201ENST00000530288 346 ntBASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 REXO1L1P-202ENST00000608646 1974 ntBASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.55■□□□□ 0.4
LIMA1Q9UHB6 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMA1Q9UHB6 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms