Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AC132872.4-202ENST00000622924 2756 ntBASIC19.42■□□□□ 0.7
VPS53Q5VIR6 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 HNRNPFP1-201ENST00000391730 1133 ntBASIC19.42■□□□□ 0.7
VPS53Q5VIR6 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AC069262.1-201ENST00000539058 672 ntBASIC19.42■□□□□ 0.7
VPS53Q5VIR6 AC018529.1-201ENST00000613063 361 ntBASIC19.42■□□□□ 0.7
VPS53Q5VIR6 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
VPS53Q5VIR6 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 AC004449.1-201ENST00000564240 433 ntBASIC19.41■□□□□ 0.7
VPS53Q5VIR6 MIR6080-201ENST00000617359 66 ntBASIC19.41■□□□□ 0.7
VPS53Q5VIR6 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 PAUPAR-201ENST00000630360 2965 ntBASIC19.41■□□□□ 0.7
VPS53Q5VIR6 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS53Q5VIR6 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS53Q5VIR6 AL136982.4-201ENST00000437689 1740 ntBASIC19.39■□□□□ 0.7
VPS53Q5VIR6 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
VPS53Q5VIR6 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
VPS53Q5VIR6 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC19.39■□□□□ 0.7
VPS53Q5VIR6 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS53Q5VIR6 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS53Q5VIR6 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms