Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 FLII-221ENST00000578558 2377 ntTSL 5 BASIC26.32■■□□□ 1.8
CUX1P39880 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX1P39880 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX1P39880 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC26.32■■□□□ 1.8
CUX1P39880 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC26.32■■□□□ 1.8
CUX1P39880 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
CUX1P39880 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CUX1P39880 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CUX1P39880 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC26.31■■□□□ 1.8
CUX1P39880 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX1P39880 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX1P39880 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC26.31■■□□□ 1.8
CUX1P39880 AC091046.1-201ENST00000331871 207 ntBASIC26.31■■□□□ 1.8
CUX1P39880 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC26.31■■□□□ 1.8
CUX1P39880 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC26.31■■□□□ 1.8
CUX1P39880 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC26.31■■□□□ 1.8
CUX1P39880 NAT9-224ENST00000583757 583 ntTSL 3 BASIC26.31■■□□□ 1.8
CUX1P39880 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC26.31■■□□□ 1.8
CUX1P39880 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CUX1P39880 AC106886.4-201ENST00000623557 2502 ntBASIC26.31■■□□□ 1.8
CUX1P39880 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CUX1P39880 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CUX1P39880 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
CUX1P39880 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC26.31■■□□□ 1.8
CUX1P39880 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC26.3■■□□□ 1.8
CUX1P39880 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 BX539320.1-201ENST00000623759 877 ntBASIC26.3■■□□□ 1.8
CUX1P39880 AC244452.3-201ENST00000636814 210 ntBASIC26.3■■□□□ 1.8
CUX1P39880 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC26.3■■□□□ 1.8
CUX1P39880 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CUX1P39880 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC26.3■■□□□ 1.8
CUX1P39880 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CUX1P39880 SDCCAG3P2-201ENST00000326105 1023 ntBASIC26.29■■□□□ 1.8
CUX1P39880 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX1P39880 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 AC016700.1-201ENST00000429424 312 ntBASIC26.29■■□□□ 1.8
CUX1P39880 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX1P39880 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 SDHD-202ENST00000525291 790 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX1P39880 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC26.29■■□□□ 1.8
CUX1P39880 RN7SL48P-201ENST00000579283 293 ntBASIC26.29■■□□□ 1.8
CUX1P39880 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CUX1P39880 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX1P39880 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 AC097724.1-201ENST00000609581 426 ntBASIC26.29■■□□□ 1.8
CUX1P39880 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 B9D1-203ENST00000395615 805 ntTSL 3 BASIC26.29■■□□□ 1.8
CUX1P39880 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 TISP43-201ENST00000409793 538 ntTSL 4 BASIC26.29■■□□□ 1.8
CUX1P39880 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CUX1P39880 POM121L10P-201ENST00000436994 1285 ntBASIC26.29■■□□□ 1.8
CUX1P39880 MIR4313-201ENST00000580760 101 ntBASIC26.29■■□□□ 1.8
CUX1P39880 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC26.29■■□□□ 1.8
CUX1P39880 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC26.29■■□□□ 1.8
CUX1P39880 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 AL354989.2-201ENST00000435838 1540 ntBASIC26.28■■□□□ 1.8
CUX1P39880 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 AC006449.6-201ENST00000612330 2296 ntBASIC26.28■■□□□ 1.8
CUX1P39880 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CUX1P39880 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC26.28■■□□□ 1.8
CUX1P39880 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms