Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.05■□□□□ 0.16
MSH3P20585 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
MSH3P20585 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.05■□□□□ 0.16
MSH3P20585 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
MSH3P20585 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
MSH3P20585 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
MSH3P20585 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.04■□□□□ 0.16
MSH3P20585 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.04■□□□□ 0.16
MSH3P20585 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 AC092183.1-201ENST00000469884 875 ntBASIC16.04■□□□□ 0.16
MSH3P20585 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.04■□□□□ 0.16
MSH3P20585 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
MSH3P20585 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.04■□□□□ 0.16
MSH3P20585 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.04■□□□□ 0.16
MSH3P20585 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.04■□□□□ 0.16
MSH3P20585 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.03■□□□□ 0.16
MSH3P20585 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.03■□□□□ 0.16
MSH3P20585 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.03■□□□□ 0.16
MSH3P20585 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
MSH3P20585 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.03■□□□□ 0.16
MSH3P20585 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
MSH3P20585 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
MSH3P20585 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.03■□□□□ 0.16
MSH3P20585 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.03■□□□□ 0.16
MSH3P20585 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 MIR648-201ENST00000385046 94 ntBASIC16.03■□□□□ 0.16
MSH3P20585 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.03■□□□□ 0.16
MSH3P20585 CNN2P2-201ENST00000443536 909 ntBASIC16.03■□□□□ 0.16
MSH3P20585 CNN2P3-201ENST00000450201 906 ntBASIC16.03■□□□□ 0.16
MSH3P20585 AC069262.1-201ENST00000539058 672 ntBASIC16.03■□□□□ 0.16
MSH3P20585 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.03■□□□□ 0.16
MSH3P20585 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 AL136317.3-201ENST00000618497 906 ntBASIC16.03■□□□□ 0.16
MSH3P20585 AC093028.1-201ENST00000622998 982 ntBASIC16.03■□□□□ 0.16
MSH3P20585 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.03■□□□□ 0.16
MSH3P20585 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.03■□□□□ 0.16
MSH3P20585 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
MSH3P20585 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
MSH3P20585 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 398.1 ms