Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PRAL-201ENST00000624952 3286 ntBASIC18.95■□□□□ 0.62
HMGB1P09429 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB1P09429 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.95■□□□□ 0.62
HMGB1P09429 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 RPL30-202ENST00000396070 440 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC18.95■□□□□ 0.62
HMGB1P09429 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 AC046158.3-201ENST00000624947 2558 ntBASIC18.95■□□□□ 0.62
HMGB1P09429 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.95■□□□□ 0.62
HMGB1P09429 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
HMGB1P09429 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
HMGB1P09429 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HMGB1P09429 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
HMGB1P09429 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
HMGB1P09429 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
HMGB1P09429 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 SPDYE14P-201ENST00000442619 822 ntBASIC18.94■□□□□ 0.62
HMGB1P09429 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.94■□□□□ 0.62
HMGB1P09429 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.94■□□□□ 0.62
HMGB1P09429 AC026150.2-201ENST00000564693 1156 ntBASIC18.94■□□□□ 0.62
HMGB1P09429 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.94■□□□□ 0.62
HMGB1P09429 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
HMGB1P09429 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
HMGB1P09429 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
HMGB1P09429 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 AC132872.4-202ENST00000622924 2756 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB1P09429 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
HMGB1P09429 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
HMGB1P09429 CICP6-201ENST00000457191 2729 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 KRT18P13-201ENST00000400056 1290 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 CNN2P11-201ENST00000429351 262 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGB1P09429 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 AC105021.1-202ENST00000570572 669 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.93■□□□□ 0.62
HMGB1P09429 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 AC007967.4-201ENST00000614700 386 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 AP001059.3-201ENST00000619053 235 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB1P09429 AC134684.3-201ENST00000641758 218 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 AL162727.3-201ENST00000635661 2787 ntBASIC18.93■□□□□ 0.62
HMGB1P09429 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.93■□□□□ 0.62
HMGB1P09429 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.93■□□□□ 0.62
HMGB1P09429 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
HMGB1P09429 AL035456.1-201ENST00000456064 1369 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms