Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
SMKR1H3BMG3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 SLC22A20-204ENST00000530038 1673 ntBASIC11.82□□□□□ -0.52
SMKR1H3BMG3 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TERF1P1-201ENST00000311003 1181 ntBASIC11.82□□□□□ -0.52
SMKR1H3BMG3 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 BANP-203ENST00000393207 2438 ntTSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AC092127.1-201ENST00000567093 3455 ntBASIC11.82□□□□□ -0.52
SMKR1H3BMG3 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC11.82□□□□□ -0.52
SMKR1H3BMG3 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC008677.1-201ENST00000519230 1561 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 SIGLEC16-201ENST00000599858 1437 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC113347.1-201ENST00000413321 391 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AK4P3-201ENST00000418260 669 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AC020765.3-201ENST00000613051 740 ntBASIC11.81□□□□□ -0.52
SMKR1H3BMG3 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
SMKR1H3BMG3 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms