Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SHROOM4Q9ULL8 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 TDH-203ENST00000531764 1110 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AL365330.1-201ENST00000607459 531 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AL021578.1-201ENST00000613646 709 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 EEF1DP4-201ENST00000446006 880 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 RPL13AP20-201ENST00000459725 609 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 RN7SL399P-201ENST00000471648 279 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AC091804.1-201ENST00000486888 567 ntBASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
SHROOM4Q9ULL8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 RN7SL560P-201ENST00000577943 264 ntBASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 AC010328.2-201ENST00000597698 1111 ntBASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SHROOM4Q9ULL8 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 ZBTB12BP-201ENST00000314232 1122 ntBASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 SLC25A24P2-201ENST00000415059 510 ntBASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC30.23■■■□□ 2.43
SHROOM4Q9ULL8 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 AC074338.1-201ENST00000416825 156 ntBASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 RPL28-203ENST00000428193 573 ntTSL 2 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 OLR1-203ENST00000432556 950 ntTSL 2 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 PTP4A1P2-201ENST00000546033 454 ntBASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 RPL28-207ENST00000558815 616 ntTSL 2 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 GNRHR2-203ENST00000581100 1187 ntBASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 RHOXF1P1-202ENST00000635473 501 ntBASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC30.22■■■□□ 2.43
SHROOM4Q9ULL8 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SHROOM4Q9ULL8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms