Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 REXO1L1P-202ENST00000608646 1974 ntBASIC17.25■□□□□ 0.35
CNTN3Q9P232 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.25■□□□□ 0.35
CNTN3Q9P232 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CNTN3Q9P232 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CNTN3Q9P232 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 SPDYE19P-201ENST00000338590 713 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC093004.1-201ENST00000508850 424 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 FTH1-202ENST00000526640 786 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 AL662799.1-202ENST00000614205 422 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 AF228730.6-201ENST00000641497 218 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC084121.3-201ENST00000641716 218 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC105233.6-201ENST00000642093 218 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.24■□□□□ 0.35
CNTN3Q9P232 AC007541.1-201ENST00000570282 1469 ntBASIC17.24■□□□□ 0.35
CNTN3Q9P232 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CNTN3Q9P232 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 DFFBP1-201ENST00000433250 979 ntBASIC17.23■□□□□ 0.35
CNTN3Q9P232 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 AL589987.1-201ENST00000453380 819 ntBASIC17.23■□□□□ 0.35
CNTN3Q9P232 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 API5-211ENST00000534695 560 ntTSL 5 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CDK4-206ENST00000549606 558 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CYP2T1P-202ENST00000641596 2535 ntBASIC17.23■□□□□ 0.35
CNTN3Q9P232 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
CNTN3Q9P232 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CNTN3Q9P232 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTN3Q9P232 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTN3Q9P232 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CNTN3Q9P232 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.22■□□□□ 0.35
CNTN3Q9P232 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms