Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 RN7SL769P-201ENST00000469386 295 ntBASIC21.53■■□□□ 1.04
NPHP3Q7Z494 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 MIR4706-201ENST00000582134 82 ntBASIC21.53■■□□□ 1.04
NPHP3Q7Z494 CYGB-203ENST00000589145 788 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP3Q7Z494 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 GCK-202ENST00000345378 2421 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.52■■□□□ 1.04
NPHP3Q7Z494 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.52■■□□□ 1.04
NPHP3Q7Z494 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 CD8B2-202ENST00000417670 633 ntBASIC21.52■■□□□ 1.03
NPHP3Q7Z494 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 PTPA-218ENST00000435132 618 ntTSL 2 BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 AL590640.2-201ENST00000457038 527 ntBASIC21.52■■□□□ 1.03
NPHP3Q7Z494 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 RNA5SP486-201ENST00000515961 83 ntBASIC21.52■■□□□ 1.03
NPHP3Q7Z494 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 AL450472.2-201ENST00000603663 1156 ntBASIC21.52■■□□□ 1.03
NPHP3Q7Z494 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.52■■□□□ 1.03
NPHP3Q7Z494 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 NAT9-222ENST00000583476 583 ntTSL 3 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NPHP3Q7Z494 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 AP001282.1-201ENST00000531301 1499 ntBASIC21.5■■□□□ 1.03
NPHP3Q7Z494 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 TSACC-208ENST00000481479 741 ntTSL 2 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 NDUFV2P1-201ENST00000596415 907 ntBASIC21.5■■□□□ 1.03
NPHP3Q7Z494 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
NPHP3Q7Z494 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP3Q7Z494 KRT8P35-201ENST00000483942 1338 ntBASIC21.49■■□□□ 1.03
NPHP3Q7Z494 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms