Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TPM4P67936 LAGE3P1-201ENST00000425356 484 ntBASIC18.13■□□□□ 0.49
TPM4P67936 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.13■□□□□ 0.49
TPM4P67936 RPS15P9-201ENST00000494093 319 ntBASIC18.13■□□□□ 0.49
TPM4P67936 MTRF1LP2-201ENST00000506027 1122 ntBASIC18.13■□□□□ 0.49
TPM4P67936 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 SART3-203ENST00000546611 1184 ntBASIC18.13■□□□□ 0.49
TPM4P67936 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.13■□□□□ 0.49
TPM4P67936 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
TPM4P67936 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
TPM4P67936 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.13■□□□□ 0.49
TPM4P67936 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TPM4P67936 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TPM4P67936 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.13■□□□□ 0.49
TPM4P67936 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.13■□□□□ 0.49
TPM4P67936 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TPM4P67936 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.12■□□□□ 0.49
TPM4P67936 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 VMO1-203ENST00000416307 712 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 FOSL1P1-201ENST00000511041 816 ntBASIC18.12■□□□□ 0.49
TPM4P67936 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.12■□□□□ 0.49
TPM4P67936 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 AC006486.2-201ENST00000624246 2199 ntBASIC18.12■□□□□ 0.49
TPM4P67936 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
TPM4P67936 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC18.12■□□□□ 0.49
TPM4P67936 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TPM4P67936 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.11■□□□□ 0.49
TPM4P67936 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 TCAF2P1-201ENST00000291129 2421 ntBASIC18.11■□□□□ 0.49
TPM4P67936 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.11■□□□□ 0.49
TPM4P67936 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.11■□□□□ 0.49
TPM4P67936 AC008608.2-201ENST00000606089 416 ntBASIC18.11■□□□□ 0.49
TPM4P67936 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TPM4P67936 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC18.11■□□□□ 0.49
TPM4P67936 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms