Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.18■□□□□ 0.02
COL5A1P20908 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL5A1P20908 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.18■□□□□ 0.02
COL5A1P20908 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL5A1P20908 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL5A1P20908 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 MIR326-201ENST00000362220 95 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 MTX1P1-201ENST00000440904 838 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 RHOQP1-201ENST00000555758 579 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 AL118558.3-201ENST00000607414 1079 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 PPA1-206ENST00000625364 644 ntTSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 AC005052.1-201ENST00000625181 2492 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 AC092506.1-202ENST00000401022 528 ntBASIC15.17■□□□□ 0.02
COL5A1P20908 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.17■□□□□ 0.02
COL5A1P20908 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.17■□□□□ 0.02
COL5A1P20908 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.17■□□□□ 0.02
COL5A1P20908 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
COL5A1P20908 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
COL5A1P20908 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.16■□□□□ 0.02
COL5A1P20908 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
COL5A1P20908 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.16■□□□□ 0.02
COL5A1P20908 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.16■□□□□ 0.02
COL5A1P20908 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL5A1P20908 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
COL5A1P20908 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
COL5A1P20908 AC006449.6-201ENST00000612330 2296 ntBASIC15.16■□□□□ 0.02
COL5A1P20908 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL5A1P20908 ACTBP8-201ENST00000403258 1108 ntBASIC15.15■□□□□ 0.02
COL5A1P20908 IGHJ2P-201ENST00000454480 60 ntBASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms