Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TARDBPP1-201ENST00000442013 1203 ntBASIC16.33■□□□□ 0.2
HOXC11O43248 RN7SL837P-201ENST00000463010 287 ntBASIC16.33■□□□□ 0.2
HOXC11O43248 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.33■□□□□ 0.2
HOXC11O43248 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC16.33■□□□□ 0.2
HOXC11O43248 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HOXC11O43248 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.33■□□□□ 0.2
HOXC11O43248 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.33■□□□□ 0.2
HOXC11O43248 AL158212.4-201ENST00000624062 1286 ntBASIC16.33■□□□□ 0.2
HOXC11O43248 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.33■□□□□ 0.2
HOXC11O43248 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HOXC11O43248 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.33■□□□□ 0.2
HOXC11O43248 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.33■□□□□ 0.2
HOXC11O43248 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HOXC11O43248 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 AC092171.3-201ENST00000610122 2651 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.32■□□□□ 0.2
HOXC11O43248 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC16.32■□□□□ 0.2
HOXC11O43248 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 AC104596.2-201ENST00000512793 793 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.32■□□□□ 0.2
HOXC11O43248 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.32■□□□□ 0.2
HOXC11O43248 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.32■□□□□ 0.2
HOXC11O43248 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.32■□□□□ 0.2
HOXC11O43248 AC106886.1-201ENST00000568660 600 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 WFDC1-204ENST00000613603 549 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 MIR8072-201ENST00000614241 80 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 AL162274.1-201ENST00000617191 1098 ntBASIC16.32■□□□□ 0.2
HOXC11O43248 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.32■□□□□ 0.2
HOXC11O43248 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HOXC11O43248 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 AGGF1P2-201ENST00000426656 2106 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HOXC11O43248 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HOXC11O43248 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HOXC11O43248 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HOXC11O43248 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HOXC11O43248 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.31■□□□□ 0.2
HOXC11O43248 ATP5G2P4-201ENST00000442175 420 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 RN7SL399P-201ENST00000471648 279 ntBASIC16.31■□□□□ 0.2
HOXC11O43248 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.31■□□□□ 0.2
HOXC11O43248 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms