Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC20.97■□□□□ 0.95
USP54Q70EL1 GOLGA2P4-201ENST00000441462 777 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 HSPB1P2-201ENST00000448722 546 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC20.97■□□□□ 0.95
USP54Q70EL1 ECM1P1-201ENST00000604092 1279 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 AC145423.3-201ENST00000615987 467 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
USP54Q70EL1 GPR182-203ENST00000622922 591 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC20.97■□□□□ 0.95
USP54Q70EL1 PRSS30P-206ENST00000641773 873 ntBASIC20.97■□□□□ 0.95
USP54Q70EL1 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC20.97■□□□□ 0.95
USP54Q70EL1 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.97■□□□□ 0.95
USP54Q70EL1 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.97■□□□□ 0.95
USP54Q70EL1 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC20.97■□□□□ 0.95
USP54Q70EL1 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.97■□□□□ 0.95
USP54Q70EL1 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP54Q70EL1 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.97■□□□□ 0.95
USP54Q70EL1 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.97■□□□□ 0.95
USP54Q70EL1 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.97■□□□□ 0.95
USP54Q70EL1 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
USP54Q70EL1 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC20.96■□□□□ 0.95
USP54Q70EL1 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.96■□□□□ 0.95
USP54Q70EL1 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC20.96■□□□□ 0.95
USP54Q70EL1 PFN1P12-201ENST00000455938 534 ntBASIC20.96■□□□□ 0.95
USP54Q70EL1 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.96■□□□□ 0.95
USP54Q70EL1 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.96■□□□□ 0.95
USP54Q70EL1 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20.96■□□□□ 0.95
USP54Q70EL1 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.96■□□□□ 0.95
USP54Q70EL1 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP54Q70EL1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.96■□□□□ 0.95
USP54Q70EL1 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 KRT8P14-201ENST00000414254 1442 ntBASIC20.96■□□□□ 0.95
USP54Q70EL1 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
USP54Q70EL1 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 KLF2P2-201ENST00000416807 1039 ntBASIC20.96■□□□□ 0.95
USP54Q70EL1 GPAA1P2-201ENST00000417923 928 ntBASIC20.96■□□□□ 0.95
USP54Q70EL1 EIF3FP3-201ENST00000434851 1086 ntBASIC20.96■□□□□ 0.95
USP54Q70EL1 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.96■□□□□ 0.95
USP54Q70EL1 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC20.96■□□□□ 0.95
USP54Q70EL1 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP54Q70EL1 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.95
USP54Q70EL1 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
USP54Q70EL1 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
USP54Q70EL1 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 MIR326-201ENST00000362220 95 ntBASIC20.95■□□□□ 0.94
USP54Q70EL1 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USP54Q70EL1 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC20.95■□□□□ 0.94
USP54Q70EL1 AC006453.4-201ENST00000636949 1252 ntBASIC20.95■□□□□ 0.94
USP54Q70EL1 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP54Q70EL1 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 AC148477.4-201ENST00000613430 1793 ntBASIC20.94■□□□□ 0.94
USP54Q70EL1 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
USP54Q70EL1 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC20.94■□□□□ 0.94
USP54Q70EL1 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC20.94■□□□□ 0.94
USP54Q70EL1 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 EEF1DP1-201ENST00000585891 896 ntBASIC20.94■□□□□ 0.94
USP54Q70EL1 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 AL008638.5-201ENST00000623814 1298 ntBASIC20.94■□□□□ 0.94
USP54Q70EL1 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC20.94■□□□□ 0.94
USP54Q70EL1 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
USP54Q70EL1 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
USP54Q70EL1 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP54Q70EL1 AC099398.1-201ENST00000567919 2776 ntBASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms