Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 AC243562.2-201ENST00000561247 970 ntBASIC17.1■□□□□ 0.33
USP41Q3LFD5 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 MIR6752-201ENST00000618442 71 ntBASIC17.1■□□□□ 0.33
USP41Q3LFD5 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 PCDH8P1-201ENST00000428983 2773 ntBASIC17.1■□□□□ 0.33
USP41Q3LFD5 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.1■□□□□ 0.33
USP41Q3LFD5 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP41Q3LFD5 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 CTBP2P3-201ENST00000585629 1255 ntBASIC17.09■□□□□ 0.33
USP41Q3LFD5 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
USP41Q3LFD5 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USP41Q3LFD5 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
USP41Q3LFD5 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
USP41Q3LFD5 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USP41Q3LFD5 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.08■□□□□ 0.33
USP41Q3LFD5 Z97205.2-201ENST00000564697 1639 ntBASIC17.08■□□□□ 0.32
USP41Q3LFD5 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USP41Q3LFD5 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 IGHV3-71-201ENST00000523324 359 ntBASIC17.08■□□□□ 0.32
USP41Q3LFD5 RARRES2P5-201ENST00000564013 466 ntBASIC17.08■□□□□ 0.32
USP41Q3LFD5 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 AL162274.1-201ENST00000617191 1098 ntBASIC17.08■□□□□ 0.32
USP41Q3LFD5 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP41Q3LFD5 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USP41Q3LFD5 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.08■□□□□ 0.32
USP41Q3LFD5 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.07■□□□□ 0.32
USP41Q3LFD5 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USP41Q3LFD5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms