Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 AP005117.1-202ENST00000581724 1908 ntBASIC16.28■□□□□ 0.2
CHRNA4P43681 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 CNN2P11-201ENST00000429351 262 ntBASIC16.28■□□□□ 0.2
CHRNA4P43681 RBPMS2P1-201ENST00000437762 623 ntBASIC16.28■□□□□ 0.2
CHRNA4P43681 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.28■□□□□ 0.2
CHRNA4P43681 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.28■□□□□ 0.2
CHRNA4P43681 ALG1L8P-201ENST00000533887 760 ntBASIC16.28■□□□□ 0.2
CHRNA4P43681 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.28■□□□□ 0.2
CHRNA4P43681 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
CHRNA4P43681 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
CHRNA4P43681 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.28■□□□□ 0.2
CHRNA4P43681 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.28■□□□□ 0.2
CHRNA4P43681 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CHRNA4P43681 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
CHRNA4P43681 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHRNA4P43681 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.27■□□□□ 0.2
CHRNA4P43681 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.27■□□□□ 0.2
CHRNA4P43681 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CHRNA4P43681 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
CHRNA4P43681 AC254562.1-201ENST00000417586 456 ntBASIC16.27■□□□□ 0.2
CHRNA4P43681 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.27■□□□□ 0.2
CHRNA4P43681 SPDYE14P-201ENST00000442619 822 ntBASIC16.27■□□□□ 0.2
CHRNA4P43681 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.27■□□□□ 0.2
CHRNA4P43681 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.27■□□□□ 0.2
CHRNA4P43681 AC023141.5-201ENST00000458585 616 ntBASIC16.27■□□□□ 0.2
CHRNA4P43681 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 PAM16-215ENST00000577031 548 ntTSL 4 BASIC16.27■□□□□ 0.2
CHRNA4P43681 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CHRNA4P43681 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 AC009093.7-201ENST00000623853 1223 ntBASIC16.27■□□□□ 0.2
CHRNA4P43681 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.27■□□□□ 0.2
CHRNA4P43681 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHRNA4P43681 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
CHRNA4P43681 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CHRNA4P43681 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CHRNA4P43681 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.27■□□□□ 0.19
CHRNA4P43681 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHRNA4P43681 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.27■□□□□ 0.19
CHRNA4P43681 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHRNA4P43681 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.26■□□□□ 0.19
CHRNA4P43681 AL691403.2-201ENST00000618460 490 ntBASIC16.26■□□□□ 0.19
CHRNA4P43681 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.26■□□□□ 0.19
CHRNA4P43681 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHRNA4P43681 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CHRNA4P43681 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms