Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 FTH1P14-201ENST00000482930 551 ntBASIC18.53■□□□□ 0.56
COL2A1P02458 RNA5SP412-201ENST00000516234 123 ntBASIC18.53■□□□□ 0.56
COL2A1P02458 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.53■□□□□ 0.56
COL2A1P02458 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC18.53■□□□□ 0.56
COL2A1P02458 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC18.53■□□□□ 0.56
COL2A1P02458 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.53■□□□□ 0.56
COL2A1P02458 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
COL2A1P02458 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
COL2A1P02458 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.53■□□□□ 0.56
COL2A1P02458 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 ACKR1-201ENST00000368121 1240 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 AC004945.1-201ENST00000416738 983 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
COL2A1P02458 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.52■□□□□ 0.56
COL2A1P02458 BCRP2-202ENST00000447763 634 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 AC093433.1-201ENST00000458048 571 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 BCRP6-201ENST00000510112 632 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.52■□□□□ 0.56
COL2A1P02458 BCRP7-201ENST00000511549 544 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
COL2A1P02458 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC18.52■□□□□ 0.56
COL2A1P02458 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.52■□□□□ 0.56
COL2A1P02458 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC18.52■□□□□ 0.56
COL2A1P02458 MIR4525-201ENST00000580000 75 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 MIR4313-201ENST00000580760 101 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
COL2A1P02458 TUBB1P2-201ENST00000422712 1306 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 TUBB1P1-201ENST00000503144 1300 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.52■□□□□ 0.56
COL2A1P02458 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
COL2A1P02458 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.52■□□□□ 0.56
COL2A1P02458 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 AD000864.1-201ENST00000624076 2295 ntBASIC18.52■□□□□ 0.56
COL2A1P02458 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.52■□□□□ 0.56
COL2A1P02458 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
COL2A1P02458 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL2A1P02458 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.55
COL2A1P02458 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL2A1P02458 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
COL2A1P02458 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
COL2A1P02458 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.52■□□□□ 0.55
COL2A1P02458 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.52■□□□□ 0.55
COL2A1P02458 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC18.52■□□□□ 0.55
COL2A1P02458 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL2A1P02458 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
COL2A1P02458 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
COL2A1P02458 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.52■□□□□ 0.55
COL2A1P02458 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL2A1P02458 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
COL2A1P02458 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
COL2A1P02458 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
COL2A1P02458 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
COL2A1P02458 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.51■□□□□ 0.55
COL2A1P02458 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC18.51■□□□□ 0.55
COL2A1P02458 AC134312.5-201ENST00000568031 1313 ntBASIC18.51■□□□□ 0.55
COL2A1P02458 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
COL2A1P02458 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC18.51■□□□□ 0.55
COL2A1P02458 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.51■□□□□ 0.55
COL2A1P02458 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC18.51■□□□□ 0.55
COL2A1P02458 AL355994.2-201ENST00000447882 704 ntBASIC18.51■□□□□ 0.55
COL2A1P02458 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.51■□□□□ 0.55
COL2A1P02458 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
COL2A1P02458 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL2A1P02458 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL2A1P02458 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.51■□□□□ 0.55
COL2A1P02458 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL2A1P02458 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms