Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
MSH5O43196 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC22.54■■□□□ 1.2
MSH5O43196 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC22.54■■□□□ 1.2
MSH5O43196 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
MSH5O43196 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH5O43196 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 GOLGA6L17P-202ENST00000614358 1398 ntBASIC22.53■■□□□ 1.2
MSH5O43196 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 NIF3L1-206ENST00000416651 967 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH5O43196 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC22.53■■□□□ 1.2
MSH5O43196 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 ARTN-206ENST00000472435 402 ntTSL 3 BASIC22.53■■□□□ 1.2
MSH5O43196 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 AC069262.1-201ENST00000539058 672 ntBASIC22.53■■□□□ 1.2
MSH5O43196 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC22.53■■□□□ 1.2
MSH5O43196 PRR29-209ENST00000582540 967 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH5O43196 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH5O43196 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
MSH5O43196 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
MSH5O43196 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
MSH5O43196 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC22.53■■□□□ 1.2
MSH5O43196 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
MSH5O43196 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC22.52■■□□□ 1.2
MSH5O43196 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 TBC1D3P4-201ENST00000338790 1075 ntBASIC22.52■■□□□ 1.2
MSH5O43196 NEK7-201ENST00000367383 586 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 AL139094.1-201ENST00000405549 1188 ntBASIC22.52■■□□□ 1.2
MSH5O43196 IGLL3P-201ENST00000412472 434 ntBASIC22.52■■□□□ 1.2
MSH5O43196 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 AC104455.1-201ENST00000417340 736 ntBASIC22.52■■□□□ 1.2
MSH5O43196 AL020989.1-201ENST00000422979 469 ntBASIC22.52■■□□□ 1.2
MSH5O43196 AC005034.1-201ENST00000426657 489 ntBASIC22.52■■□□□ 1.2
MSH5O43196 HNRNPH3P1-201ENST00000431935 583 ntBASIC22.52■■□□□ 1.2
MSH5O43196 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 HLA-J-202ENST00000469281 1241 ntBASIC22.52■■□□□ 1.2
MSH5O43196 NAA50-206ENST00000493454 964 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 AC122714.2-201ENST00000502787 707 ntBASIC22.52■■□□□ 1.2
MSH5O43196 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH5O43196 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 AC244131.1-201ENST00000542152 922 ntBASIC22.52■■□□□ 1.2
MSH5O43196 DAD1-205ENST00000543337 501 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH5O43196 AC025678.2-201ENST00000562061 970 ntBASIC22.52■■□□□ 1.2
MSH5O43196 AC011477.4-201ENST00000590274 609 ntTSL 3 BASIC22.52■■□□□ 1.2
MSH5O43196 AC005498.2-205ENST00000593218 784 ntBASIC22.52■■□□□ 1.2
MSH5O43196 AC245100.7-201ENST00000609678 442 ntBASIC22.52■■□□□ 1.2
MSH5O43196 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 AL162574.3-201ENST00000623209 612 ntBASIC22.52■■□□□ 1.2
MSH5O43196 AC010507.1-201ENST00000633895 436 ntBASIC22.52■■□□□ 1.2
MSH5O43196 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
MSH5O43196 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
MSH5O43196 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC22.52■■□□□ 1.2
MSH5O43196 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
MSH5O43196 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
MSH5O43196 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.19
MSH5O43196 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
MSH5O43196 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC22.51■■□□□ 1.19
MSH5O43196 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
MSH5O43196 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH5O43196 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
MSH5O43196 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC22.51■■□□□ 1.19
MSH5O43196 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms