Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 HLA-A-201ENST00000376802 1334 ntBASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 AL589702.1-201ENST00000641229 1509 ntBASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 AC140658.5-201ENST00000438532 169 ntBASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 AC004877.2-201ENST00000623941 599 ntBASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.77■□□□□ 0.28
ATG4AQ8WYN0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 AC134407.2-201ENST00000625089 1978 ntBASIC16.77■□□□□ 0.27
ATG4AQ8WYN0 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 AC020658.6-201ENST00000623564 1870 ntBASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 AC007064.4-201ENST00000637740 555 ntBASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 TNRC18P2-201ENST00000417666 2714 ntBASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ATG4AQ8WYN0 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC007967.2-201ENST00000432613 625 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 KRT18P2-201ENST00000447938 1258 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC079776.4-201ENST00000511039 504 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 KRT19P2-202ENST00000557173 1012 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC064836.3-201ENST00000607928 673 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC104109.2-201ENST00000602919 1418 ntBASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
ATG4AQ8WYN0 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms