Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AC106886.4-201ENST00000623557 2502 ntBASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
LMX1AQ8TE12 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 REXO1L8P-201ENST00000604378 1897 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 AC098850.1-201ENST00000419919 790 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 ARSEP1-201ENST00000420443 635 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 IGHV3-71-201ENST00000523324 359 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 HILS1-202ENST00000545329 423 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 KRT8P37-201ENST00000451609 1420 ntBASIC15.66■□□□□ 0.1
LMX1AQ8TE12 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.66■□□□□ 0.1
LMX1AQ8TE12 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AZGP1P1-201ENST00000411909 902 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC007274.1-201ENST00000439805 662 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC245100.5-201ENST00000452108 331 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 RN7SL837P-201ENST00000463010 287 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC104596.2-201ENST00000512793 793 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 AC092171.3-201ENST00000610122 2651 ntBASIC15.65■□□□□ 0.1
LMX1AQ8TE12 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
LMX1AQ8TE12 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms