Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC055717.3-201ENST00000622967 595 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AC104640.1-201ENST00000562617 2109 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SKA3Q8IX90 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 AL592424.1-201ENST00000563624 1536 ntBASIC14.36□□□□□ -0.11
SKA3Q8IX90 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.36□□□□□ -0.11
SKA3Q8IX90 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AL592309.1-201ENST00000443127 649 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 IGHV3-62-201ENST00000520057 340 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC105233.2-201ENST00000523697 349 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 AF228730.5-201ENST00000530288 346 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 RNF34-208ENST00000555076 593 ntTSL 3 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 LINC01225-203ENST00000563550 1244 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC073389.1-201ENST00000595595 795 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC022145.2-201ENST00000598203 171 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC023511.2-201ENST00000618803 211 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 AC024909.3-201ENST00000611513 2257 ntBASIC14.35□□□□□ -0.11
SKA3Q8IX90 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.35□□□□□ -0.11
SKA3Q8IX90 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SKA3Q8IX90 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 MTHFR-217ENST00000641820 1569 ntBASIC14.34□□□□□ -0.11
SKA3Q8IX90 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
SKA3Q8IX90 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SKA3Q8IX90 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms