Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 APOA2-204ENST00000464492 530 ntTSL 3 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 POU5F1P6-201ENST00000466990 990 ntBASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AC068880.1-201ENST00000507289 2297 ntBASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AC107373.2-201ENST00000607735 490 ntBASIC21.59■■□□□ 1.05
NPHP3Q7Z494 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.59■■□□□ 1.05
NPHP3Q7Z494 AC015818.8-201ENST00000587907 1519 ntBASIC21.59■■□□□ 1.05
NPHP3Q7Z494 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 HOMER2P2-201ENST00000451621 847 ntBASIC21.58■■□□□ 1.05
NPHP3Q7Z494 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 HNRNPUP1-201ENST00000554987 333 ntBASIC21.58■■□□□ 1.05
NPHP3Q7Z494 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.58■■□□□ 1.05
NPHP3Q7Z494 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 AL138709.1-201ENST00000614840 1693 ntBASIC21.58■■□□□ 1.04
NPHP3Q7Z494 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
NPHP3Q7Z494 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 HNRNPA1P32-201ENST00000396326 963 ntBASIC21.57■■□□□ 1.04
NPHP3Q7Z494 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 GGCT-203ENST00000409144 836 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 KRTAP10-13P-201ENST00000412914 571 ntBASIC21.57■■□□□ 1.04
NPHP3Q7Z494 MPRIPP1-201ENST00000452433 1089 ntBASIC21.57■■□□□ 1.04
NPHP3Q7Z494 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 MIR3619-201ENST00000579667 83 ntBASIC21.57■■□□□ 1.04
NPHP3Q7Z494 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 KRT8P19-201ENST00000551916 1455 ntBASIC21.57■■□□□ 1.04
NPHP3Q7Z494 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NPHP3Q7Z494 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 HINT2P1-201ENST00000419438 481 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 PHKG1P2-201ENST00000457537 863 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AP001582.1-201ENST00000525856 295 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AC015910.1-201ENST00000579400 975 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AP005019.2-201ENST00000615104 511 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 AL096828.3-201ENST00000615354 462 ntBASIC21.56■■□□□ 1.04
NPHP3Q7Z494 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP3Q7Z494 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms