Protein–RNA interactions for Protein: Q06546

GABPA, GA-binding protein alpha chain, humanhuman

Predictions only

Length 454 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GABPAQ06546 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
GABPAQ06546 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.82■□□□□ 0.6
GABPAQ06546 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
GABPAQ06546 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.81■□□□□ 0.6
GABPAQ06546 REXO1L1P-202ENST00000608646 1974 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.81■□□□□ 0.6
GABPAQ06546 U91328.1-201ENST00000437528 223 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 MYCLP2-201ENST00000449268 967 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 INE1-201ENST00000456273 945 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 PHKG1P2-201ENST00000457537 863 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 AC097359.3-201ENST00000603982 1210 ntBASIC18.81■□□□□ 0.6
GABPAQ06546 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.81■□□□□ 0.6
GABPAQ06546 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.81■□□□□ 0.6
GABPAQ06546 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
GABPAQ06546 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
GABPAQ06546 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.8■□□□□ 0.6
GABPAQ06546 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
GABPAQ06546 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 AP006294.1-201ENST00000415407 339 ntBASIC18.8■□□□□ 0.6
GABPAQ06546 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC18.8■□□□□ 0.6
GABPAQ06546 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC18.8■□□□□ 0.6
GABPAQ06546 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
GABPAQ06546 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.8■□□□□ 0.6
GABPAQ06546 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 AL158212.4-201ENST00000624062 1286 ntBASIC18.8■□□□□ 0.6
GABPAQ06546 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
GABPAQ06546 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
GABPAQ06546 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC18.8■□□□□ 0.6
GABPAQ06546 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
GABPAQ06546 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
GABPAQ06546 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
GABPAQ06546 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.79■□□□□ 0.6
GABPAQ06546 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
GABPAQ06546 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms